Installation

CauTrigger requires Python 3.10 or newer.

pip install git+https://github.com/ChengmingZhang-CAS/CauTrigger.git@main

A reference list of dependency packages is provided in environment.yml.

CauTrigger uses velocyto to access colDeltaCorpartial for local partial correlation analysis. Since velocyto relies on Cython extensions, please ensure that prerequisites such as NumPy and Cython are available in your environment. For details, see the official installation guide: https://velocyto.org/velocyto.py/install/index.html#